| TW | LW | Wks | Title | Artist | Label |
| 1 | 2 | 11 | No, Not One | This Train | Organic |
| 2 | 4 | 10 | Choose Life | Big Tent Revival | ReThink |
| 3 | 5 | 10 | Unforgetful You | Jars of Clay | Essential |
| 4 | 7 | 10 | The Song Is Alive | Point of Grace | Word |
| 5 | 8 | 10 | God In A Box | Tracy Dawn | Atlantic |
| 6 | 9 | 9 | Hallelujah | Supertones | BEC |
| 7 | 10 | 9 | I Am Not Alone | Natalie Grant | Benson |
| 8 | 13 | 8 | Naïve | Chris Rice | Rocketown |
| 9 | 11 | 8 | Love, Liberty, Disco | Newsboys | Sparrow |
| 10 | 12 | 9 | This is Your Time | Michael W. Smith | Reunion |
| 11 | 14 | 7 | Springs of Life | Ginny Owens | Rocketown |
| 12 | 15 | 8 | The Book | Michael Card | Myrrh |
| 13 | 16 | 8 | Love One Another | Nikki Leonti/John Elefante | Pamplin |
| 14 | 17 | 7 | Mansions | Burlap to Cashmere | Squint |
| 15 | 18 | 7 | Store | According to John | KMG |
| 16 | 19 | 7 | Here and Now | Mitch McVicker | White Plastic Bag Music |
| 17 | 20 | 7 | Friend For Life | Margaret Becker | Sparrow |
| 18 | 21 | 6 | Sky Falls Down | Third Day | Essential |
| 19 | 22 | 6 | Make Me An Instrument | A Ragamuffin Band | Myrrh |
| 20 | 23 | 6 | Reason | LaRue | Reunion |
| 21 | 24 | 6 | Back Into Grace | Russ Taff | Benson |
| 22 | 25 | 5 | I Could Sing Of Your Love Forever | Sonic Flood w/ Lisa Kimmey | Gotee |
| 23 | 26 | 5 | Whatever | Steven Curtis Chapman | Sparrow |
| 24 | 27 | 5 | Yes I Believe In God | Rebecca St. James | ForeFront |
| 25 | 33 | 6 | Window | Out of Eden | Gotee |
| 26 | 28 | 5 | So Clearly | Stereo Deluxx | Organic |
| 27 | 29 | 4 | Light the Fire Again | Any Given Day Praise Band | BEC Recordings |
| 28 | 30 | 4 | Tidal Wave | Clear | Ardent |
| 29 | 31 | 4 | All Around The World | Raze | ForeFront |
| 30 | 32 | 4 | Who Is This | The Insyderz | KMG Records |
| 31 | 34 | 3 | Father Christmas | Steven Courtney | Sun Hill Records |
| 32 | 35 | 3 | Everything Will Be Alright | All Star United | Essential |
| 33 | 36 | 3 | Pocketful of Nails | Christopher Wright | Independent |
| 34 | 37 | 2 | Shifting Sand | Caedmon's Call | Essential |
| 35 | 38 | 2 | Out Here | Geoff Moore | ForeFront |
| 36 | 39 | 2 | This Day | Five O'Clock People | Pamplin |
| 37 | 40 | 2 | Follow the Word | Maire Brennan | Word |
| 38 | NEW | 1 | Heart of the Matter | Brother's Keeper | Ardent |
| 39 | NEW | 1 | Revive Me | Satellite Soul | ForeFront |
| 40 | NEW | 1 | Christmas in Kosovo | Steve Grace | Independent |