| 1 | 1 | 16 | He Reigns | Newsboys | Sparrow |
| 2 | 2 | 10 | You Are So Good To Me | Third Day | Essential |
| 3 | 3 | 13 | You Found Me | FFH | Essential |
| 4 | 4 | 12 | Falling Down | Bebo Norman | Essential |
| 5 | 7 | 10 | I Still Believe | Jeremy Camp | BEC |
| 6 | 8 | 9 | Let The Praises Ring | Lincoln Brewster | Vertical |
| 7 | 5 | 16 | Blessed Be Your Name | Matt Redman | Worship Extreme |
| 8 | 10 | 11 | I Stand Amazed | Glassbyrd | Word |
| 9 | 13 | 8 | Getting Into You | Relient K | Gotee |
| 10 | 14 | 9 | She Must And Shall Go Free | Derek Webb | INO |
| 11 | 9 | 12 | I Thank You | Rebecca St. James | Forefront |
| 12 | 15 | 9 | Pierced | Audio Adrenaline | Forefront |
| 13 | 16 | 7 | Day By Day | Point Of Grace | Word |
| 14 | 17 | 8 | Legacy | Nichole Nordeman | Sparrow |
| 15 | 18 | 7 | New | 40 Days | Provident |
| 16 | 20 | 8 | The Man You Want Me To Be | Phil Joel | InPop |
| 17 | 19 | 10 | You Still Have My Heart | Rita Springer | Floodgate Records |
| 18 | 21 | 6 | Neighborhoods | Big Daddy Weave | Fervent |
| 19 | 22 | 6 | Welcome Home | O.C. Supertones | BEC |
| 20 | 23 | 7 | Every Moment | Joy Williams | Reunion |
| 21 | 24 | 4 | Less Like Scars | Sara Groves | INO |
| 22 | 25 | 4 | The Hand Song | Go Fish | InPop |
| 23 | 27 | 5 | Don't Dream It's Over | Sixpence None The Richer | Word |
| 24 | 26 | 6 | By And By | Jennifer Knapp | Gotee |
| 25 | NEW | 1 | Somebody's Praying Me Through | Allen Asbury | Independent |
| 26 | 29 | 5 | Long Before The Sun | Scott Krippayne | Independent |
| 27 | 30 | 3 | Word Of God Speak | Mercy Me | INO |
| 28 | 31 | 4 | Water | Kristy Starling | Word |
| 29 | 32 | 3 | Give You My Heart | Jeff Deyo | Gotee |
| 30 | 35 | 2 | Step By Step | Michael W. Smith | Reunion |
| 31 | 34 | 3 | Overwhelm Me | Steve Garrett | Independent |
| 32 | 33 | 4 | Be All End All | Tree 63 | InPop |
| 33 | 36 | 2 | Smile (Just Want To Be With You) | Chris Rice | Rocketown |
| 34 | 37 | 3 | Love Is A Cross | Russ Lee | Christian Records |
| 35 | 39 | 2 | Be Near | Shane & Shane | Inpop |
| 36 | 40 | 2 | I Left Everything To Follow You | Michael Card | Community |
| 37 | 38 | 2 | Freedom | Michael English | Curb |
| 38 | NEW | 1 | I Cannot Hide From You | Greg Long | Discovery House Music |
| 39 | NEW | 1 | How Do I Love Her | Steven Curtis Chapman | Sparrow |
| 40 | NEW | 1 | Acceptable | Charmaine | Inpop |